This archive contains 3D models of a kink/turn grafted into the F. nucleatum glycine riboswitch structure (3P49) with FARFAR (Fragment assembly of RNA with Full Atom Refinement). Models were carried out in the Rosetta framework, by Fang-Chieh Chou & Rhiju Das.

These are the structure models given in Supporting Fig. S4 of Kladwang, W., Chou, F.-C., and Das, R. (2012) "Automated RNA structure prediction uncovers a kink-turn linker in double glycine riboswitches", JACS, 134 (3):1404-1407.

The paper is available at:
http://dx.doi.org/10.1021/ja2093508
http://www.stanford.edu/~rhiju/Kladwang_Chou_Das_2012_JACS_ALL.pdf

Please address questions or comments to rhiju [at] stanford.edu !

Models posted 25 May, 2012.

