[REAL OPT]Default value for [-cpu_frac]   10
[REAL OPT]Default value for [-frame_rate]   10
[INT  OPT]Default value for [-cpu_run_time]  7200
command executed: /Users/rhiju/rosetta++/rosetta.mactelboincgraphics -extract -l temp.1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out.list -paths /Users/rhiju/paths.txt -s 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out -enable_dna -enable_rna -fa_input
[T/F  OPT]Default FALSE value for [-no_option_display]
[T/F  OPT]Default FALSE value for [-args_file]
[STR  OPT]New value for [-paths] /Users/rhiju/paths.txt.
[T/F  OPT]Default FALSE value for [-version]
[T/F  OPT]Default FALSE value for [-score]
[T/F  OPT]Default FALSE value for [-abinitio]
[T/F  OPT]Default FALSE value for [-refine]
[T/F  OPT]Default FALSE value for [-assemble]
[T/F  OPT]Default FALSE value for [-idealize]
[T/F  OPT]Default FALSE value for [-relax]
[T/F  OPT]Default FALSE value for [-abrelax]
[T/F  OPT]Default FALSE value for [-abrelax_mode]
[T/F  OPT]Default FALSE value for [-design]
[T/F  OPT]Default FALSE value for [-dock]
[T/F  OPT]Default FALSE value for [-membrane]
[T/F  OPT]Default FALSE value for [-loops]
[T/F  OPT]Default FALSE value for [-pdbstats]
[T/F  OPT]Default FALSE value for [-interface]
[T/F  OPT]Default FALSE value for [-barcode_stats]
[T/F  OPT]Default FALSE value for [-featurize]
[T/F  OPT]Default FALSE value for [-pKa]
[T/F  OPT]Default FALSE value for [-pose_looping]
[T/F  OPT]Default FALSE value for [-domain_insertion]
[T/F  OPT]Default FALSE value for [-antibody_modeler]
[T/F  OPT]Default FALSE value for [-pose1]
[T/F  OPT]Default FALSE value for [-bk_min]
[T/F  OPT]Default FALSE value for [-adna]
[T/F  OPT]Default FALSE value for [-pdna]
[T/F  OPT]Default FALSE value for [-prna]
[T/F  OPT]Default FALSE value for [-jumping]
[T/F  OPT]Default FALSE value for [-pose_abinitio]
[T/F  OPT]Default FALSE value for [-pose_rhiju]
[T/F  OPT]New TRUE value for [-extract]
[T/F  OPT]Default FALSE value for [-jump_relax]
[T/F  OPT]Default FALSE value for [-cst_mode]
[T/F  OPT]Default FALSE value for [-mj_min]
Rosetta mode: pose1
[T/F  OPT]Default FALSE value for [-chain]
[T/F  OPT]Default FALSE value for [-protein]
[T/F  OPT]Default FALSE value for [-series]
[INT  OPT]Default value for [-nstruct]  10
[T/F  OPT]Default FALSE value for [-read_all_chains]
[T/F  OPT]Default FALSE value for [-preserve_header]
[T/F  OPT]Default FALSE value for [-use_pdb_numbering]
[T/F  OPT]Default FALSE value for [-flip_symmetric_sidechains]
[T/F  OPT]New TRUE value for [-fa_input]
[T/F  OPT]Default FALSE value for [-repack]
[T/F  OPT]Default FALSE value for [-no_optH]
[T/F  OPT]Default FALSE value for [-overwrite]
[T/F  OPT]Default FALSE value for [-no_filters]
[T/F  OPT]Default FALSE value for [-output_pdb_gz]
[T/F  OPT]Default FALSE value for [-output_silent_gz]
[T/F  OPT]Default FALSE value for [-output_scorefile_gz]
[T/F  OPT]Default FALSE value for [-pose_silent_out]
[T/F  OPT]Default FALSE value for [-sasapack_bvalues]
[T/F  OPT]Default FALSE value for [-cenlist_values]
[T/F  OPT]Default FALSE value for [-termini]
[T/F  OPT]Default FALSE value for [-Nterminus]
[T/F  OPT]Default FALSE value for [-Cterminus]
[T/F  OPT]Default FALSE value for [-use_trie]
[T/F  OPT]Default FALSE value for [-no_trie]
[T/F  OPT]Default FALSE value for [-use_conformer]
[T/F  OPT]Default FALSE value for [-use_bbind_conformer]
[T/F  OPT]Default FALSE value for [-trials_trie]
[T/F  OPT]Default FALSE value for [-no_trials_trie]
[T/F  OPT]Default FALSE value for [-pose_relax]
[T/F  OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
[T/F  OPT]Default FALSE value for [-read_interaction_graph]
[T/F  OPT]Default FALSE value for [-write_interaction_graph]
[STR  OPT]Default value for [-ig_file] .
[T/F  OPT]Default FALSE value for [-packer_precompute_only]
[T/F  OPT]Default FALSE value for [-tight_memory_restrictions]
[T/F  OPT]Default FALSE value for [-lazy_ig]
[T/F  OPT]Default FALSE value for [-linmem_ig]
[T/F  OPT]Default FALSE value for [-minimalist_ig]
[T/F  OPT]Default FALSE value for [-use_sasa_pack_score]
[T/F  OPT]Default FALSE value for [-output_dot_kinemage]
[T/F  OPT]Default FALSE value for [-pack_low_temp_annealing]
[T/F  OPT]Default FALSE value for [-multi_cool_annealer]
[T/F  OPT]Default FALSE value for [-debug_annealer_design]
[T/F  OPT]Default FALSE value for [-no_his_his_pairE]
[T/F  OPT]Default FALSE value for [-silent_input]
[T/F  OPT]Default FALSE value for [-skip_scorefile_check]
[T/F  OPT]Default FALSE value for [-timer]
[T/F  OPT]Default FALSE value for [-count_attempts]
[T/F  OPT]Default FALSE value for [-status]
[T/F  OPT]Default FALSE value for [-decoy_status]
[T/F  OPT]Default FALSE value for [-ise_movie]
[T/F  OPT]Default FALSE value for [-output_all]
[T/F  OPT]Default FALSE value for [-output_chi_silent]
[T/F  OPT]Default FALSE value for [-accept_all]
[T/F  OPT]Default FALSE value for [-skip_missing_residues]
[T/F  OPT]Default FALSE value for [-use_input_sc]
[T/F  OPT]Default FALSE value for [-use_input_cb]
[STR  OPT]Default value for [-weightfile] none.
[STR  OPT]Default value for [-cst] cst.
[STR  OPT]Default value for [-dpl] dpl.
[STR  OPT]Default value for [-resfile] none.
[STR  OPT]Default value for [-equiv_resfile] none.
[T/F  OPT]Default FALSE value for [-auto_resfile]
[T/F  OPT]Default FALSE value for [-chain_inc]
WARNING:: refold_input T, input_fa T
 refolding of fullatom input not suppported
 setting refold_input F
WARNING:: input_fa T, require_start F
fullatom input not allowed when no starting structures are being input 
setting input_fa F
[T/F  OPT]Default FALSE value for [-full_filename]
[T/F  OPT]Default FALSE value for [-map_sequence]
[INT  OPT]Default value for [-max_frags]  200
[T/F  OPT]Default FALSE value for [-output_centroids]
[STR  OPT]Default value for [-protein_name_prefix] .
[STR  OPT]Default value for [-frags_name_prefix] .
[T/F  OPT]Default FALSE value for [-protein_name_prefix_homolog]
[T/F  OPT]Default FALSE value for [-use_homolog_env_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_pair_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_cendist_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-output_hbond_info]
[T/F  OPT]Default FALSE value for [-monomer_input]
[REAL OPT]Default value for [-vdw_reweight]   1
[REAL OPT]Default value for [-env_reweight]   1
[REAL OPT]Default value for [-pair_reweight]   1
[REAL OPT]Default value for [-cb_reweight]   1
[REAL OPT]Default value for [-sheet_reweight]   1
[REAL OPT]Default value for [-ss_reweight]   1
[REAL OPT]Default value for [-hs_reweight]   1
[REAL OPT]Default value for [-rsigma_reweight]   1
[REAL OPT]Default value for [-rg_reweight]   1
[REAL OPT]Default value for [-pc_reweight]   1
[REAL OPT]Default value for [-fa_atr_reweight]   1
[REAL OPT]Default value for [-fa_rep_reweight]   1
[REAL OPT]Default value for [-fa_dun_reweight ]   1
[REAL OPT]Default value for [-fa_pair_reweight]   1
[REAL OPT]Default value for [-fa_plane_reweight]   1
[REAL OPT]Default value for [-fa_solv_reweight]   1
[REAL OPT]Default value for [-fa_ref_reweight ]   1
[REAL OPT]Default value for [-fa_pH_reweight]   1
[REAL OPT]Default value for [-fa_h2o_reweight]   1
[REAL OPT]Default value for [-fa_prob1b_reweight]   1
[REAL OPT]Default value for [-fa_gb_elec_reweigh]   1
[REAL OPT]Default value for [-hb_srbb_reweight]   1
[REAL OPT]Default value for [-hb_lrbb_reweight]   1
[REAL OPT]Default value for [-hb_sc_reweight]   1
[REAL OPT]Default value for [-chainbreak_reweight]   1
[REAL OPT]Default value for [-electron_density_reweight]   1
[REAL OPT]Default value for [-dummy_model_reweight]   1
[REAL OPT]Default value for [-saxs_model_reweight]   1
[REAL OPT]Default value for [-Wplane_total]   0
[REAL OPT]Default value for [-barcode_reweight]   1
[REAL OPT]Default value for [-barcode_energy_reweight]   1
[T/F  OPT]Default FALSE value for [-fa_max_dis]
[T/F  OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
[T/F  OPT]Default FALSE value for [-find_disulf]
[T/F  OPT]Default FALSE value for [-fix_disulf]
[T/F  OPT]Default FALSE value for [-prna]
[T/F  OPT]New TRUE value for [-enable_dna]
[T/F  OPT]New TRUE value for [-enable_rna]
[T/F  OPT]Default FALSE value for [-dna_interface]
[T/F  OPT]Default FALSE value for [-enable_ligand_aa]
[T/F  OPT]Default FALSE value for [-phospho_ser]
[T/F  OPT]Default FALSE value for [-surface]
[T/F  OPT]Default FALSE value for [-loops]
[T/F  OPT]Default FALSE value for [-taboo]
[T/F  OPT]Default FALSE value for [-vary_omega]
[T/F  OPT]Default FALSE value for [-fine_hb_categories]
[T/F  OPT]Default FALSE value for [-geometric_sol]
[T/F  OPT]Default FALSE value for [-multi_chain]
[T/F  OPT]Default FALSE value for [-ex1]
[T/F  OPT]Default FALSE value for [-ex2]
[T/F  OPT]Default FALSE value for [-ex3]
[T/F  OPT]Default FALSE value for [-ex4]
[T/F  OPT]Default FALSE value for [-ex1aro]
[T/F  OPT]Default FALSE value for [-ex1aro_half]
[T/F  OPT]Default FALSE value for [-ex2aro_only]
[T/F  OPT]Default FALSE value for [-ex1aro_exposed]
[T/F  OPT]Default FALSE value for [-ex2aro_exposed]
[T/F  OPT]Default FALSE value for [-exOH]
[INT  OPT]Default value for [-extrachi_cutoff]  18
[T/F  OPT]Default FALSE value for [-rot_pert]
[T/F  OPT]Default FALSE value for [-rot_pert_input]
[T/F  OPT]Default FALSE value for [-exdb]
[T/F  OPT]Default FALSE value for [-use_electrostatic_repulsion]
[T/F  OPT]Default FALSE value for [-explicit_h2o]
[T/F  OPT]Default FALSE value for [-solvate]
[T/F  OPT]Default FALSE value for [-pH]
[T/F  OPT]Default FALSE value for [-try_both_his_tautomers]
[T/F  OPT]Default FALSE value for [-hydrate_dna]
[T/F  OPT]Default FALSE value for [-ex_dna_waters]
[T/F  OPT]Default FALSE value for [-minimize_rot]
[T/F  OPT]Default FALSE value for [-read_hetero_h2o]
[T/F  OPT]Default FALSE value for [-Wint_score_only]
[T/F  OPT]Default FALSE value for [-Wint_repack_only]
[T/F  OPT]Default FALSE value for [-ligand]
[T/F  OPT]Default FALSE value for [-enzyme_design]
[T/F  OPT]Default FALSE value for [-score_contact_flag]
[T/F  OPT]Default FALSE value for [-score_contact_weight]
[T/F  OPT]Default FALSE value for [-score_contact_threshold]
[T/F  OPT]Default FALSE value for [-scorefxn]
default centroid scorefxn:  4
default fullatom scorefxn:  12
[INT  OPT]Default value for [-run_level]  0
[T/F  OPT]Default FALSE value for [-silent]
[T/F  OPT]Default FALSE value for [-output_silent_gz]
[T/F  OPT]Default FALSE value for [-verbose]
[T/F  OPT]Default FALSE value for [-gush]
[T/F  OPT]Default FALSE value for [-yap]
[T/F  OPT]Default FALSE value for [-chat]
[T/F  OPT]Default FALSE value for [-inform]
[T/F  OPT]Default FALSE value for [-quiet]
run level:  0
[T/F  OPT]Default FALSE value for [-benchmark]
[T/F  OPT]Default FALSE value for [-debug]
[INT  OPT]Default value for [-sym_des_units]  1
[T/F  OPT]Default FALSE value for [-mj_min]
[REAL OPT]Default value for [-mod_hhrep_height]   1
[REAL OPT]Default value for [-mod_hhrep_width]   1
[REAL OPT]Default value for [-mod_hhrep_center]   2.79999995
[REAL OPT]Default value for [-mod_hhrep_exponent]   4
[REAL OPT]Default value for [-smooth_etable_ljweight]   1.15999997
[REAL OPT]Default value for [-smooth_etable_solvweight]   1.5
[STR  OPT]New value for [-s] 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out.
Starting structure: 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out
Reading /users/rhiju/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
[STR  OPT]Default value for [-description_file] rosetta_description.txt.
Reading /users/rhiju/rosetta_database/phi.theta.36.HS.resmooth
Reading /users/rhiju/rosetta_database/phi.theta.36.SS.resmooth
[STR  OPT]Default value for [-atom_vdw_set] default.
[T/F  OPT]Default FALSE value for [-IUPAC]
Atom_mode set to all
Reading /users/rhiju/rosetta_database/paircutoffs
[T/F  OPT]Default FALSE value for [-interface_ds]
[T/F  OPT]Default FALSE value for [-decoystats]
set_decoystats_flag: from,to F F
[T/F  OPT]Default FALSE value for [-decoyfeatures]
[T/F  OPT]Default FALSE value for [-t32s3]
[T/F  OPT]Default FALSE value for [-evolution]
[T/F  OPT]Default FALSE value for [-evol_recomb]
[T/F  OPT]Default FALSE value for [-profile]
BOINC :: [2007- 7- 2 11:15:24:] :: mode: pose1 :: nstartnum: 1 :: number_of_output: 10 :: num_decoys: 0 :: pct_complete: 0
[T/F  OPT]Default FALSE value for [-watchdog]
[T/F  OPT]Default FALSE value for [-pose_benchmark]
[T/F  OPT]Default FALSE value for [-pose_barcode_stats]
[T/F  OPT]Default FALSE value for [-bk_min]
[T/F  OPT]Default FALSE value for [-jumping]
[T/F  OPT]Default FALSE value for [-pose_abinitio]
[T/F  OPT]Default FALSE value for [-electron_density_score]
[T/F  OPT]New TRUE value for [-extract]
[T/F  OPT]New TRUE value for [-fa_input]
[T/F  OPT]New TRUE value for [-s]
[STR  OPT]New value for [-s] 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out.
[STR  OPT]Default value for [-start_pdb] dummy.
[REAL OPT]Default value for [-cpu_frac]   10
[REAL OPT]Default value for [-frame_rate]   10
[INT  OPT]Default value for [-cpu_run_time]  7200
command executed: /Users/rhiju/rosetta++/rosetta.mactelboincgraphics -extract -l temp.1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out.list -paths /Users/rhiju/paths.txt -s 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out -enable_dna -enable_rna -fa_input
[T/F  OPT]Default FALSE value for [-no_option_display]
[T/F  OPT]Default FALSE value for [-args_file]
[STR  OPT]New value for [-paths] /Users/rhiju/paths.txt.
[T/F  OPT]Default FALSE value for [-version]
[T/F  OPT]Default FALSE value for [-score]
[T/F  OPT]Default FALSE value for [-abinitio]
[T/F  OPT]Default FALSE value for [-refine]
[T/F  OPT]Default FALSE value for [-assemble]
[T/F  OPT]Default FALSE value for [-idealize]
[T/F  OPT]Default FALSE value for [-relax]
[T/F  OPT]Default FALSE value for [-abrelax]
[T/F  OPT]Default FALSE value for [-abrelax_mode]
[T/F  OPT]Default FALSE value for [-design]
[T/F  OPT]Default FALSE value for [-dock]
[T/F  OPT]Default FALSE value for [-membrane]
[T/F  OPT]Default FALSE value for [-loops]
[T/F  OPT]Default FALSE value for [-pdbstats]
[T/F  OPT]Default FALSE value for [-interface]
[T/F  OPT]Default FALSE value for [-barcode_stats]
[T/F  OPT]Default FALSE value for [-featurize]
[T/F  OPT]Default FALSE value for [-pKa]
[T/F  OPT]Default FALSE value for [-pose_looping]
[T/F  OPT]Default FALSE value for [-domain_insertion]
[T/F  OPT]Default FALSE value for [-antibody_modeler]
[T/F  OPT]Default FALSE value for [-pose1]
[T/F  OPT]Default FALSE value for [-bk_min]
[T/F  OPT]Default FALSE value for [-adna]
[T/F  OPT]Default FALSE value for [-pdna]
[T/F  OPT]Default FALSE value for [-prna]
[T/F  OPT]Default FALSE value for [-jumping]
[T/F  OPT]Default FALSE value for [-pose_abinitio]
[T/F  OPT]Default FALSE value for [-pose_rhiju]
[T/F  OPT]New TRUE value for [-extract]
[T/F  OPT]Default FALSE value for [-jump_relax]
[T/F  OPT]Default FALSE value for [-cst_mode]
[T/F  OPT]Default FALSE value for [-mj_min]
Rosetta mode: pose1
[T/F  OPT]Default FALSE value for [-chain]
[T/F  OPT]Default FALSE value for [-protein]
[T/F  OPT]Default FALSE value for [-series]
[INT  OPT]Default value for [-nstruct]  10
[T/F  OPT]Default FALSE value for [-read_all_chains]
[T/F  OPT]Default FALSE value for [-preserve_header]
[T/F  OPT]Default FALSE value for [-use_pdb_numbering]
[T/F  OPT]Default FALSE value for [-flip_symmetric_sidechains]
[T/F  OPT]New TRUE value for [-fa_input]
[T/F  OPT]Default FALSE value for [-repack]
[T/F  OPT]Default FALSE value for [-no_optH]
[T/F  OPT]Default FALSE value for [-overwrite]
[T/F  OPT]Default FALSE value for [-no_filters]
[T/F  OPT]Default FALSE value for [-output_pdb_gz]
[T/F  OPT]Default FALSE value for [-output_silent_gz]
[T/F  OPT]Default FALSE value for [-output_scorefile_gz]
[T/F  OPT]Default FALSE value for [-pose_silent_out]
[T/F  OPT]Default FALSE value for [-sasapack_bvalues]
[T/F  OPT]Default FALSE value for [-cenlist_values]
[T/F  OPT]Default FALSE value for [-termini]
[T/F  OPT]Default FALSE value for [-Nterminus]
[T/F  OPT]Default FALSE value for [-Cterminus]
[T/F  OPT]Default FALSE value for [-use_trie]
[T/F  OPT]Default FALSE value for [-no_trie]
[T/F  OPT]Default FALSE value for [-use_conformer]
[T/F  OPT]Default FALSE value for [-use_bbind_conformer]
[T/F  OPT]Default FALSE value for [-trials_trie]
[T/F  OPT]Default FALSE value for [-no_trials_trie]
[T/F  OPT]Default FALSE value for [-pose_relax]
[T/F  OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
[T/F  OPT]Default FALSE value for [-read_interaction_graph]
[T/F  OPT]Default FALSE value for [-write_interaction_graph]
[STR  OPT]Default value for [-ig_file] .
[T/F  OPT]Default FALSE value for [-packer_precompute_only]
[T/F  OPT]Default FALSE value for [-tight_memory_restrictions]
[T/F  OPT]Default FALSE value for [-lazy_ig]
[T/F  OPT]Default FALSE value for [-linmem_ig]
[T/F  OPT]Default FALSE value for [-minimalist_ig]
[T/F  OPT]Default FALSE value for [-use_sasa_pack_score]
[T/F  OPT]Default FALSE value for [-output_dot_kinemage]
[T/F  OPT]Default FALSE value for [-pack_low_temp_annealing]
[T/F  OPT]Default FALSE value for [-multi_cool_annealer]
[T/F  OPT]Default FALSE value for [-debug_annealer_design]
[T/F  OPT]Default FALSE value for [-no_his_his_pairE]
[T/F  OPT]Default FALSE value for [-silent_input]
[T/F  OPT]Default FALSE value for [-skip_scorefile_check]
[T/F  OPT]Default FALSE value for [-timer]
[T/F  OPT]Default FALSE value for [-count_attempts]
[T/F  OPT]Default FALSE value for [-status]
[T/F  OPT]Default FALSE value for [-decoy_status]
[T/F  OPT]Default FALSE value for [-ise_movie]
[T/F  OPT]Default FALSE value for [-output_all]
[T/F  OPT]Default FALSE value for [-output_chi_silent]
[T/F  OPT]Default FALSE value for [-accept_all]
[T/F  OPT]Default FALSE value for [-skip_missing_residues]
[T/F  OPT]Default FALSE value for [-use_input_sc]
[T/F  OPT]Default FALSE value for [-use_input_cb]
[STR  OPT]Default value for [-weightfile] none.
[STR  OPT]Default value for [-cst] cst.
[STR  OPT]Default value for [-dpl] dpl.
[STR  OPT]Default value for [-resfile] none.
[STR  OPT]Default value for [-equiv_resfile] none.
[T/F  OPT]Default FALSE value for [-auto_resfile]
[T/F  OPT]Default FALSE value for [-chain_inc]
WARNING:: refold_input T, input_fa T
 refolding of fullatom input not suppported
 setting refold_input F
WARNING:: input_fa T, require_start F
fullatom input not allowed when no starting structures are being input 
setting input_fa F
[T/F  OPT]Default FALSE value for [-full_filename]
[T/F  OPT]Default FALSE value for [-map_sequence]
[INT  OPT]Default value for [-max_frags]  200
[T/F  OPT]Default FALSE value for [-output_centroids]
[STR  OPT]Default value for [-protein_name_prefix] .
[STR  OPT]Default value for [-frags_name_prefix] .
[T/F  OPT]Default FALSE value for [-protein_name_prefix_homolog]
[T/F  OPT]Default FALSE value for [-use_homolog_env_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_pair_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_cendist_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-output_hbond_info]
[T/F  OPT]Default FALSE value for [-monomer_input]
[REAL OPT]Default value for [-vdw_reweight]   1
[REAL OPT]Default value for [-env_reweight]   1
[REAL OPT]Default value for [-pair_reweight]   1
[REAL OPT]Default value for [-cb_reweight]   1
[REAL OPT]Default value for [-sheet_reweight]   1
[REAL OPT]Default value for [-ss_reweight]   1
[REAL OPT]Default value for [-hs_reweight]   1
[REAL OPT]Default value for [-rsigma_reweight]   1
[REAL OPT]Default value for [-rg_reweight]   1
[REAL OPT]Default value for [-pc_reweight]   1
[REAL OPT]Default value for [-fa_atr_reweight]   1
[REAL OPT]Default value for [-fa_rep_reweight]   1
[REAL OPT]Default value for [-fa_dun_reweight ]   1
[REAL OPT]Default value for [-fa_pair_reweight]   1
[REAL OPT]Default value for [-fa_plane_reweight]   1
[REAL OPT]Default value for [-fa_solv_reweight]   1
[REAL OPT]Default value for [-fa_ref_reweight ]   1
[REAL OPT]Default value for [-fa_pH_reweight]   1
[REAL OPT]Default value for [-fa_h2o_reweight]   1
[REAL OPT]Default value for [-fa_prob1b_reweight]   1
[REAL OPT]Default value for [-fa_gb_elec_reweigh]   1
[REAL OPT]Default value for [-hb_srbb_reweight]   1
[REAL OPT]Default value for [-hb_lrbb_reweight]   1
[REAL OPT]Default value for [-hb_sc_reweight]   1
[REAL OPT]Default value for [-chainbreak_reweight]   1
[REAL OPT]Default value for [-electron_density_reweight]   1
[REAL OPT]Default value for [-dummy_model_reweight]   1
[REAL OPT]Default value for [-saxs_model_reweight]   1
[REAL OPT]Default value for [-Wplane_total]   0
[REAL OPT]Default value for [-barcode_reweight]   1
[REAL OPT]Default value for [-barcode_energy_reweight]   1
[T/F  OPT]Default FALSE value for [-fa_max_dis]
[T/F  OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
[T/F  OPT]Default FALSE value for [-find_disulf]
[T/F  OPT]Default FALSE value for [-fix_disulf]
[T/F  OPT]Default FALSE value for [-prna]
[T/F  OPT]New TRUE value for [-enable_dna]
[T/F  OPT]New TRUE value for [-enable_rna]
[T/F  OPT]Default FALSE value for [-dna_interface]
[T/F  OPT]Default FALSE value for [-enable_ligand_aa]
[T/F  OPT]Default FALSE value for [-phospho_ser]
[T/F  OPT]Default FALSE value for [-surface]
[T/F  OPT]Default FALSE value for [-loops]
[T/F  OPT]Default FALSE value for [-taboo]
[T/F  OPT]Default FALSE value for [-vary_omega]
[T/F  OPT]Default FALSE value for [-fine_hb_categories]
[T/F  OPT]Default FALSE value for [-geometric_sol]
[T/F  OPT]Default FALSE value for [-multi_chain]
[T/F  OPT]Default FALSE value for [-ex1]
[T/F  OPT]Default FALSE value for [-ex2]
[T/F  OPT]Default FALSE value for [-ex3]
[T/F  OPT]Default FALSE value for [-ex4]
[T/F  OPT]Default FALSE value for [-ex1aro]
[T/F  OPT]Default FALSE value for [-ex1aro_half]
[T/F  OPT]Default FALSE value for [-ex2aro_only]
[T/F  OPT]Default FALSE value for [-ex1aro_exposed]
[T/F  OPT]Default FALSE value for [-ex2aro_exposed]
[T/F  OPT]Default FALSE value for [-exOH]
[INT  OPT]Default value for [-extrachi_cutoff]  18
[T/F  OPT]Default FALSE value for [-rot_pert]
[T/F  OPT]Default FALSE value for [-rot_pert_input]
[T/F  OPT]Default FALSE value for [-exdb]
[T/F  OPT]Default FALSE value for [-use_electrostatic_repulsion]
[T/F  OPT]Default FALSE value for [-explicit_h2o]
[T/F  OPT]Default FALSE value for [-solvate]
[T/F  OPT]Default FALSE value for [-pH]
[T/F  OPT]Default FALSE value for [-try_both_his_tautomers]
[T/F  OPT]Default FALSE value for [-hydrate_dna]
[T/F  OPT]Default FALSE value for [-ex_dna_waters]
[T/F  OPT]Default FALSE value for [-minimize_rot]
[T/F  OPT]Default FALSE value for [-read_hetero_h2o]
[T/F  OPT]Default FALSE value for [-Wint_score_only]
[T/F  OPT]Default FALSE value for [-Wint_repack_only]
[T/F  OPT]Default FALSE value for [-ligand]
[T/F  OPT]Default FALSE value for [-enzyme_design]
[T/F  OPT]Default FALSE value for [-score_contact_flag]
[T/F  OPT]Default FALSE value for [-score_contact_weight]
[T/F  OPT]Default FALSE value for [-score_contact_threshold]
[T/F  OPT]Default FALSE value for [-scorefxn]
default centroid scorefxn:  4
default fullatom scorefxn:  12
[INT  OPT]Default value for [-run_level]  0
[T/F  OPT]Default FALSE value for [-silent]
[T/F  OPT]Default FALSE value for [-output_silent_gz]
[T/F  OPT]Default FALSE value for [-verbose]
[T/F  OPT]Default FALSE value for [-gush]
[T/F  OPT]Default FALSE value for [-yap]
[T/F  OPT]Default FALSE value for [-chat]
[T/F  OPT]Default FALSE value for [-inform]
[T/F  OPT]Default FALSE value for [-quiet]
run level:  0
[T/F  OPT]Default FALSE value for [-benchmark]
[T/F  OPT]Default FALSE value for [-debug]
[INT  OPT]Default value for [-sym_des_units]  1
[T/F  OPT]Default FALSE value for [-mj_min]
[REAL OPT]Default value for [-mod_hhrep_height]   1
[REAL OPT]Default value for [-mod_hhrep_width]   1
[REAL OPT]Default value for [-mod_hhrep_center]   2.79999995
[REAL OPT]Default value for [-mod_hhrep_exponent]   4
[REAL OPT]Default value for [-smooth_etable_ljweight]   1.15999997
[REAL OPT]Default value for [-smooth_etable_solvweight]   1.5
[STR  OPT]New value for [-s] 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out.
Starting structure: 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out
Reading /users/rhiju/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
[STR  OPT]Default value for [-description_file] rosetta_description.txt.
Reading /users/rhiju/rosetta_database/phi.theta.36.HS.resmooth
Reading /users/rhiju/rosetta_database/phi.theta.36.SS.resmooth
[STR  OPT]Default value for [-atom_vdw_set] default.
[T/F  OPT]Default FALSE value for [-IUPAC]
Atom_mode set to all
Reading /users/rhiju/rosetta_database/paircutoffs
[T/F  OPT]Default FALSE value for [-interface_ds]
[T/F  OPT]Default FALSE value for [-decoystats]
set_decoystats_flag: from,to F F
[T/F  OPT]Default FALSE value for [-decoyfeatures]
[T/F  OPT]Default FALSE value for [-t32s3]
[T/F  OPT]Default FALSE value for [-evolution]
[T/F  OPT]Default FALSE value for [-evol_recomb]
[T/F  OPT]Default FALSE value for [-profile]
BOINC :: [2007- 7- 2 11:56:32:] :: mode: pose1 :: nstartnum: 1 :: number_of_output: 10 :: num_decoys: 0 :: pct_complete: 0
[T/F  OPT]Default FALSE value for [-watchdog]
[T/F  OPT]Default FALSE value for [-pose_benchmark]
[T/F  OPT]Default FALSE value for [-pose_barcode_stats]
[T/F  OPT]Default FALSE value for [-bk_min]
[T/F  OPT]Default FALSE value for [-jumping]
[T/F  OPT]Default FALSE value for [-pose_abinitio]
[T/F  OPT]Default FALSE value for [-electron_density_score]
[T/F  OPT]New TRUE value for [-extract]
[T/F  OPT]New TRUE value for [-fa_input]
[T/F  OPT]New TRUE value for [-s]
[STR  OPT]New value for [-s] 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out.
[STR  OPT]Default value for [-start_pdb] dummy.
[T/F  OPT]Default FALSE value for [-t]
[T/F  OPT]Default FALSE value for [-all]
[T/F  OPT]New TRUE value for [-l]
[T/F  OPT]New TRUE value for [-l]
[STR  OPT]New value for [-l] temp.1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out.list.
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
initializing full atom functions
[T/F  OPT]Default FALSE value for [-soft_rep]
[T/F  OPT]Default FALSE value for [-soft_rep_design]
[T/F  OPT]Default FALSE value for [-use_aw]
[T/F  OPT]Default FALSE value for [-use_bw]
[T/F  OPT]Default FALSE value for [-use_packing_etables_always]
[T/F  OPT]Default FALSE value for [-smooth_etable]
[T/F  OPT]Default FALSE value for [-reduce_templates]
[T/F  OPT]Default FALSE value for [-gen_born]
[T/F  OPT]Default FALSE value for [-small_radii]
[STR  OPT]Default value for [-fa_lj_rep_slope] highres.
[T/F  OPT]Default FALSE value for [-dna_weights]
Starting energy table calculation
Energy table parameter set: polh_aroh  Revision: 14003 Date: 2007-04-06 11:24:40 -0700 (Fri, 06 Apr 2007)
[T/F  OPT]Default FALSE value for [-mod_hhrep]
Finished calculating energy tables.
[T/F  OPT]Default FALSE value for [-mod_etable]
[T/F  OPT]Default FALSE value for [-input_etables]
[T/F  OPT]Default FALSE value for [-output_etables]
WARNING! WARNING! Skipping bbdep, avgE, table readin.
[T/F  OPT]Default FALSE value for [-new_centroid_packing]
[REAL OPT]Default value for [-centroid_pack_weight]   2
[T/F  OPT]Default FALSE value for [-separate_centroid_pack_score]
[REAL OPT]Default value for [-cb_weight]   1
[REAL OPT]Default value for [-localstrandpair_penalty]   0
[REAL OPT]Default value for [-rsd_wt_helix]   1
[REAL OPT]Default value for [-rsd_wt_loop]   1
[REAL OPT]Default value for [-rsd_wt_strand]   1
[REAL OPT]Default value for [-strand_dist_cutoff]   6.5
[T/F  OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
[REAL OPT]Default value for [-seq_sep_scale]   20
[REAL OPT]Default value for [-max_strand_dist_cutoff]   12
[T/F  OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
[T/F  OPT]Default FALSE value for [-handedness_score]
Pose::dump_pdb: .//S_00007_0001762_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004579_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003597_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004812_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0000290_0.pdb
======================================================
DONE ::     1 starting structures  2.76853 cpu seconds
This process generated      0 decoys from       0 attempts
======================================================
[REAL OPT]Default value for [-cpu_frac]   10
[REAL OPT]Default value for [-frame_rate]   10
[INT  OPT]Default value for [-cpu_run_time]  7200
command executed: /Users/rhiju/rosetta++/rosetta.mactelboincgraphics -extract -l temp.1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out.list -paths /Users/rhiju/paths.txt -s 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out -enable_dna -enable_rna -fa_input
[T/F  OPT]Default FALSE value for [-no_option_display]
[T/F  OPT]Default FALSE value for [-args_file]
[STR  OPT]New value for [-paths] /Users/rhiju/paths.txt.
[T/F  OPT]Default FALSE value for [-version]
[T/F  OPT]Default FALSE value for [-score]
[T/F  OPT]Default FALSE value for [-abinitio]
[T/F  OPT]Default FALSE value for [-refine]
[T/F  OPT]Default FALSE value for [-assemble]
[T/F  OPT]Default FALSE value for [-idealize]
[T/F  OPT]Default FALSE value for [-relax]
[T/F  OPT]Default FALSE value for [-abrelax]
[T/F  OPT]Default FALSE value for [-abrelax_mode]
[T/F  OPT]Default FALSE value for [-design]
[T/F  OPT]Default FALSE value for [-dock]
[T/F  OPT]Default FALSE value for [-membrane]
[T/F  OPT]Default FALSE value for [-loops]
[T/F  OPT]Default FALSE value for [-pdbstats]
[T/F  OPT]Default FALSE value for [-interface]
[T/F  OPT]Default FALSE value for [-barcode_stats]
[T/F  OPT]Default FALSE value for [-featurize]
[T/F  OPT]Default FALSE value for [-pKa]
[T/F  OPT]Default FALSE value for [-pose_looping]
[T/F  OPT]Default FALSE value for [-domain_insertion]
[T/F  OPT]Default FALSE value for [-antibody_modeler]
[T/F  OPT]Default FALSE value for [-pose1]
[T/F  OPT]Default FALSE value for [-bk_min]
[T/F  OPT]Default FALSE value for [-adna]
[T/F  OPT]Default FALSE value for [-pdna]
[T/F  OPT]Default FALSE value for [-prna]
[T/F  OPT]Default FALSE value for [-jumping]
[T/F  OPT]Default FALSE value for [-pose_abinitio]
[T/F  OPT]Default FALSE value for [-pose_rhiju]
[T/F  OPT]New TRUE value for [-extract]
[T/F  OPT]Default FALSE value for [-jump_relax]
[T/F  OPT]Default FALSE value for [-cst_mode]
[T/F  OPT]Default FALSE value for [-mj_min]
Rosetta mode: pose1
[T/F  OPT]Default FALSE value for [-chain]
[T/F  OPT]Default FALSE value for [-protein]
[T/F  OPT]Default FALSE value for [-series]
[INT  OPT]Default value for [-nstruct]  10
[T/F  OPT]Default FALSE value for [-read_all_chains]
[T/F  OPT]Default FALSE value for [-preserve_header]
[T/F  OPT]Default FALSE value for [-use_pdb_numbering]
[T/F  OPT]Default FALSE value for [-flip_symmetric_sidechains]
[T/F  OPT]New TRUE value for [-fa_input]
[T/F  OPT]Default FALSE value for [-repack]
[T/F  OPT]Default FALSE value for [-no_optH]
[T/F  OPT]Default FALSE value for [-overwrite]
[T/F  OPT]Default FALSE value for [-no_filters]
[T/F  OPT]Default FALSE value for [-output_pdb_gz]
[T/F  OPT]Default FALSE value for [-output_silent_gz]
[T/F  OPT]Default FALSE value for [-output_scorefile_gz]
[T/F  OPT]Default FALSE value for [-pose_silent_out]
[T/F  OPT]Default FALSE value for [-sasapack_bvalues]
[T/F  OPT]Default FALSE value for [-cenlist_values]
[T/F  OPT]Default FALSE value for [-termini]
[T/F  OPT]Default FALSE value for [-Nterminus]
[T/F  OPT]Default FALSE value for [-Cterminus]
[T/F  OPT]Default FALSE value for [-use_trie]
[T/F  OPT]Default FALSE value for [-no_trie]
[T/F  OPT]Default FALSE value for [-use_conformer]
[T/F  OPT]Default FALSE value for [-use_bbind_conformer]
[T/F  OPT]Default FALSE value for [-trials_trie]
[T/F  OPT]Default FALSE value for [-no_trials_trie]
[T/F  OPT]Default FALSE value for [-pose_relax]
[T/F  OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
[T/F  OPT]Default FALSE value for [-read_interaction_graph]
[T/F  OPT]Default FALSE value for [-write_interaction_graph]
[STR  OPT]Default value for [-ig_file] .
[T/F  OPT]Default FALSE value for [-packer_precompute_only]
[T/F  OPT]Default FALSE value for [-tight_memory_restrictions]
[T/F  OPT]Default FALSE value for [-lazy_ig]
[T/F  OPT]Default FALSE value for [-linmem_ig]
[T/F  OPT]Default FALSE value for [-minimalist_ig]
[T/F  OPT]Default FALSE value for [-use_sasa_pack_score]
[T/F  OPT]Default FALSE value for [-output_dot_kinemage]
[T/F  OPT]Default FALSE value for [-pack_low_temp_annealing]
[T/F  OPT]Default FALSE value for [-multi_cool_annealer]
[T/F  OPT]Default FALSE value for [-debug_annealer_design]
[T/F  OPT]Default FALSE value for [-no_his_his_pairE]
[T/F  OPT]Default FALSE value for [-silent_input]
[T/F  OPT]Default FALSE value for [-skip_scorefile_check]
[T/F  OPT]Default FALSE value for [-timer]
[T/F  OPT]Default FALSE value for [-count_attempts]
[T/F  OPT]Default FALSE value for [-status]
[T/F  OPT]Default FALSE value for [-decoy_status]
[T/F  OPT]Default FALSE value for [-ise_movie]
[T/F  OPT]Default FALSE value for [-output_all]
[T/F  OPT]Default FALSE value for [-output_chi_silent]
[T/F  OPT]Default FALSE value for [-accept_all]
[T/F  OPT]Default FALSE value for [-skip_missing_residues]
[T/F  OPT]Default FALSE value for [-use_input_sc]
[T/F  OPT]Default FALSE value for [-use_input_cb]
[STR  OPT]Default value for [-weightfile] none.
[STR  OPT]Default value for [-cst] cst.
[STR  OPT]Default value for [-dpl] dpl.
[STR  OPT]Default value for [-resfile] none.
[STR  OPT]Default value for [-equiv_resfile] none.
[T/F  OPT]Default FALSE value for [-auto_resfile]
[T/F  OPT]Default FALSE value for [-chain_inc]
WARNING:: refold_input T, input_fa T
 refolding of fullatom input not suppported
 setting refold_input F
WARNING:: input_fa T, require_start F
fullatom input not allowed when no starting structures are being input 
setting input_fa F
[T/F  OPT]Default FALSE value for [-full_filename]
[T/F  OPT]Default FALSE value for [-map_sequence]
[INT  OPT]Default value for [-max_frags]  200
[T/F  OPT]Default FALSE value for [-output_centroids]
[STR  OPT]Default value for [-protein_name_prefix] .
[STR  OPT]Default value for [-frags_name_prefix] .
[T/F  OPT]Default FALSE value for [-protein_name_prefix_homolog]
[T/F  OPT]Default FALSE value for [-use_homolog_env_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_pair_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_cendist_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-output_hbond_info]
[T/F  OPT]Default FALSE value for [-monomer_input]
[REAL OPT]Default value for [-vdw_reweight]   1
[REAL OPT]Default value for [-env_reweight]   1
[REAL OPT]Default value for [-pair_reweight]   1
[REAL OPT]Default value for [-cb_reweight]   1
[REAL OPT]Default value for [-sheet_reweight]   1
[REAL OPT]Default value for [-ss_reweight]   1
[REAL OPT]Default value for [-hs_reweight]   1
[REAL OPT]Default value for [-rsigma_reweight]   1
[REAL OPT]Default value for [-rg_reweight]   1
[REAL OPT]Default value for [-pc_reweight]   1
[REAL OPT]Default value for [-fa_atr_reweight]   1
[REAL OPT]Default value for [-fa_rep_reweight]   1
[REAL OPT]Default value for [-fa_dun_reweight ]   1
[REAL OPT]Default value for [-fa_pair_reweight]   1
[REAL OPT]Default value for [-fa_plane_reweight]   1
[REAL OPT]Default value for [-fa_solv_reweight]   1
[REAL OPT]Default value for [-fa_ref_reweight ]   1
[REAL OPT]Default value for [-fa_pH_reweight]   1
[REAL OPT]Default value for [-fa_h2o_reweight]   1
[REAL OPT]Default value for [-fa_prob1b_reweight]   1
[REAL OPT]Default value for [-fa_gb_elec_reweigh]   1
[REAL OPT]Default value for [-hb_srbb_reweight]   1
[REAL OPT]Default value for [-hb_lrbb_reweight]   1
[REAL OPT]Default value for [-hb_sc_reweight]   1
[REAL OPT]Default value for [-chainbreak_reweight]   1
[REAL OPT]Default value for [-electron_density_reweight]   1
[REAL OPT]Default value for [-dummy_model_reweight]   1
[REAL OPT]Default value for [-saxs_model_reweight]   1
[REAL OPT]Default value for [-Wplane_total]   0
[REAL OPT]Default value for [-barcode_reweight]   1
[REAL OPT]Default value for [-barcode_energy_reweight]   1
[T/F  OPT]Default FALSE value for [-fa_max_dis]
[T/F  OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
[T/F  OPT]Default FALSE value for [-find_disulf]
[T/F  OPT]Default FALSE value for [-fix_disulf]
[T/F  OPT]Default FALSE value for [-prna]
[T/F  OPT]New TRUE value for [-enable_dna]
[T/F  OPT]New TRUE value for [-enable_rna]
[T/F  OPT]Default FALSE value for [-dna_interface]
[T/F  OPT]Default FALSE value for [-enable_ligand_aa]
[T/F  OPT]Default FALSE value for [-phospho_ser]
[T/F  OPT]Default FALSE value for [-surface]
[T/F  OPT]Default FALSE value for [-loops]
[T/F  OPT]Default FALSE value for [-taboo]
[T/F  OPT]Default FALSE value for [-vary_omega]
[T/F  OPT]Default FALSE value for [-fine_hb_categories]
[T/F  OPT]Default FALSE value for [-geometric_sol]
[T/F  OPT]Default FALSE value for [-multi_chain]
[T/F  OPT]Default FALSE value for [-ex1]
[T/F  OPT]Default FALSE value for [-ex2]
[T/F  OPT]Default FALSE value for [-ex3]
[T/F  OPT]Default FALSE value for [-ex4]
[T/F  OPT]Default FALSE value for [-ex1aro]
[T/F  OPT]Default FALSE value for [-ex1aro_half]
[T/F  OPT]Default FALSE value for [-ex2aro_only]
[T/F  OPT]Default FALSE value for [-ex1aro_exposed]
[T/F  OPT]Default FALSE value for [-ex2aro_exposed]
[T/F  OPT]Default FALSE value for [-exOH]
[INT  OPT]Default value for [-extrachi_cutoff]  18
[T/F  OPT]Default FALSE value for [-rot_pert]
[T/F  OPT]Default FALSE value for [-rot_pert_input]
[T/F  OPT]Default FALSE value for [-exdb]
[T/F  OPT]Default FALSE value for [-use_electrostatic_repulsion]
[T/F  OPT]Default FALSE value for [-explicit_h2o]
[T/F  OPT]Default FALSE value for [-solvate]
[T/F  OPT]Default FALSE value for [-pH]
[T/F  OPT]Default FALSE value for [-try_both_his_tautomers]
[T/F  OPT]Default FALSE value for [-hydrate_dna]
[T/F  OPT]Default FALSE value for [-ex_dna_waters]
[T/F  OPT]Default FALSE value for [-minimize_rot]
[T/F  OPT]Default FALSE value for [-read_hetero_h2o]
[T/F  OPT]Default FALSE value for [-Wint_score_only]
[T/F  OPT]Default FALSE value for [-Wint_repack_only]
[T/F  OPT]Default FALSE value for [-ligand]
[T/F  OPT]Default FALSE value for [-enzyme_design]
[T/F  OPT]Default FALSE value for [-score_contact_flag]
[T/F  OPT]Default FALSE value for [-score_contact_weight]
[T/F  OPT]Default FALSE value for [-score_contact_threshold]
[T/F  OPT]Default FALSE value for [-scorefxn]
default centroid scorefxn:  4
default fullatom scorefxn:  12
[INT  OPT]Default value for [-run_level]  0
[T/F  OPT]Default FALSE value for [-silent]
[T/F  OPT]Default FALSE value for [-output_silent_gz]
[T/F  OPT]Default FALSE value for [-verbose]
[T/F  OPT]Default FALSE value for [-gush]
[T/F  OPT]Default FALSE value for [-yap]
[T/F  OPT]Default FALSE value for [-chat]
[T/F  OPT]Default FALSE value for [-inform]
[T/F  OPT]Default FALSE value for [-quiet]
run level:  0
[T/F  OPT]Default FALSE value for [-benchmark]
[T/F  OPT]Default FALSE value for [-debug]
[INT  OPT]Default value for [-sym_des_units]  1
[T/F  OPT]Default FALSE value for [-mj_min]
[REAL OPT]Default value for [-mod_hhrep_height]   1
[REAL OPT]Default value for [-mod_hhrep_width]   1
[REAL OPT]Default value for [-mod_hhrep_center]   2.79999995
[REAL OPT]Default value for [-mod_hhrep_exponent]   4
[REAL OPT]Default value for [-smooth_etable_ljweight]   1.15999997
[REAL OPT]Default value for [-smooth_etable_solvweight]   1.5
[STR  OPT]New value for [-s] 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out.
Starting structure: 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out
Reading /users/rhiju/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
[STR  OPT]Default value for [-description_file] rosetta_description.txt.
Reading /users/rhiju/rosetta_database/phi.theta.36.HS.resmooth
Reading /users/rhiju/rosetta_database/phi.theta.36.SS.resmooth
[STR  OPT]Default value for [-atom_vdw_set] default.
[T/F  OPT]Default FALSE value for [-IUPAC]
Atom_mode set to all
Reading /users/rhiju/rosetta_database/paircutoffs
[T/F  OPT]Default FALSE value for [-interface_ds]
[T/F  OPT]Default FALSE value for [-decoystats]
set_decoystats_flag: from,to F F
[T/F  OPT]Default FALSE value for [-decoyfeatures]
[T/F  OPT]Default FALSE value for [-t32s3]
[T/F  OPT]Default FALSE value for [-evolution]
[T/F  OPT]Default FALSE value for [-evol_recomb]
[T/F  OPT]Default FALSE value for [-profile]
BOINC :: [2007- 7- 2 12:13:42:] :: mode: pose1 :: nstartnum: 1 :: number_of_output: 10 :: num_decoys: 0 :: pct_complete: 0
[T/F  OPT]Default FALSE value for [-watchdog]
[T/F  OPT]Default FALSE value for [-pose_benchmark]
[T/F  OPT]Default FALSE value for [-pose_barcode_stats]
[T/F  OPT]Default FALSE value for [-bk_min]
[T/F  OPT]Default FALSE value for [-jumping]
[T/F  OPT]Default FALSE value for [-pose_abinitio]
[T/F  OPT]Default FALSE value for [-electron_density_score]
[T/F  OPT]New TRUE value for [-extract]
[T/F  OPT]New TRUE value for [-fa_input]
[T/F  OPT]New TRUE value for [-s]
[STR  OPT]New value for [-s] 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out.
[STR  OPT]Default value for [-start_pdb] dummy.
read structure S_00009_0000985_0 500
read structure S_00009_0003612_0 1000
read structure S_00005_0002002_0 1500
[T/F  OPT]Default FALSE value for [-t]
[T/F  OPT]Default FALSE value for [-all]
[T/F  OPT]New TRUE value for [-l]
[T/F  OPT]New TRUE value for [-l]
[STR  OPT]New value for [-l] temp.1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.clean.out.list.
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
initializing full atom functions
[T/F  OPT]Default FALSE value for [-soft_rep]
[T/F  OPT]Default FALSE value for [-soft_rep_design]
[T/F  OPT]Default FALSE value for [-use_aw]
[T/F  OPT]Default FALSE value for [-use_bw]
[T/F  OPT]Default FALSE value for [-use_packing_etables_always]
[T/F  OPT]Default FALSE value for [-smooth_etable]
[T/F  OPT]Default FALSE value for [-reduce_templates]
[T/F  OPT]Default FALSE value for [-gen_born]
[T/F  OPT]Default FALSE value for [-small_radii]
[STR  OPT]Default value for [-fa_lj_rep_slope] highres.
[T/F  OPT]Default FALSE value for [-dna_weights]
Starting energy table calculation
Energy table parameter set: polh_aroh  Revision: 14003 Date: 2007-04-06 11:24:40 -0700 (Fri, 06 Apr 2007)
[T/F  OPT]Default FALSE value for [-mod_hhrep]
Finished calculating energy tables.
[T/F  OPT]Default FALSE value for [-mod_etable]
[T/F  OPT]Default FALSE value for [-input_etables]
[T/F  OPT]Default FALSE value for [-output_etables]
WARNING! WARNING! Skipping bbdep, avgE, table readin.
[T/F  OPT]Default FALSE value for [-new_centroid_packing]
[REAL OPT]Default value for [-centroid_pack_weight]   2
[T/F  OPT]Default FALSE value for [-separate_centroid_pack_score]
[REAL OPT]Default value for [-cb_weight]   1
[REAL OPT]Default value for [-localstrandpair_penalty]   0
[REAL OPT]Default value for [-rsd_wt_helix]   1
[REAL OPT]Default value for [-rsd_wt_loop]   1
[REAL OPT]Default value for [-rsd_wt_strand]   1
[REAL OPT]Default value for [-strand_dist_cutoff]   6.5
[T/F  OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
[REAL OPT]Default value for [-seq_sep_scale]   20
[REAL OPT]Default value for [-max_strand_dist_cutoff]   12
[T/F  OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
[T/F  OPT]Default FALSE value for [-handedness_score]
Pose::dump_pdb: .//S_00005_0002386_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0001935_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00022_0003175_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004868_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0004298_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0000671_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0003638_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0004693_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000020_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0003867_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0003228_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00018_0002871_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000222_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0004255_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002514_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002471_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0001205_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0003436_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000406_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00019_0002371_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00019_0000739_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0003101_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0003500_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004152_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0003628_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003322_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0000291_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0003033_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001698_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0001750_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0001462_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0000633_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0003255_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004005_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0001298_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0002432_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001035_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002023_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0000412_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003179_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0001902_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002515_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0004863_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0003462_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0002996_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004460_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001862_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0000047_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0003925_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0004911_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0003930_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002964_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000095_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0001220_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0002916_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004226_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004893_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004326_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004848_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0004949_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0004842_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0001309_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004051_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0003175_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0004516_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0001108_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0003704_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002348_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0001144_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0001612_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0004239_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003140_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001892_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000156_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002298_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0002840_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000305_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000604_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004244_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002863_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0001991_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0000182_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002505_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002190_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0003890_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0001067_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004648_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0001963_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0001925_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001844_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002657_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0000319_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004834_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004818_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0003230_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0000056_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0000043_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000198_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002617_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0000563_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0000183_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0004805_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0003438_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0002180_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003524_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0003467_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002300_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0000870_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00023_0002186_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004239_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0003302_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00015_0004685_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004576_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001921_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002151_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0001791_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001095_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0002505_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0000412_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004207_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0003323_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0003883_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0000488_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0000945_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0003073_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001113_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0000725_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0003832_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00022_0001419_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0003422_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0000718_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0002470_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002781_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002663_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0003549_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0003248_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0004342_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0002955_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0001651_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002525_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0000500_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004150_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0001927_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000245_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001171_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00029_0003175_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004062_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004953_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004090_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0002605_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002871_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004405_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001210_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0001035_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0000089_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0001761_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000337_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0002210_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0003475_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0001163_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002064_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002642_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0001067_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0003667_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000250_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004845_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0002024_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003534_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0003310_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0000889_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0001520_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000680_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0001550_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00017_0002299_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0004144_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0004897_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002996_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0002118_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0000927_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0001207_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002873_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00015_0000488_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004077_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002862_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004138_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004289_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004856_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000714_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003150_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002609_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002233_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0003625_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0003730_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0002873_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0000686_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0002339_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0000157_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002767_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002117_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0000613_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003782_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0000719_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0001573_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004199_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004108_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00017_0001190_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000778_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003928_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00020_0001169_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000639_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002942_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001986_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0002380_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004258_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0001941_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001161_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001048_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004909_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003782_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002377_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0004192_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00021_0000056_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001807_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0004269_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0001325_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0000950_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0002101_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0002861_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0003496_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004455_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0003197_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000355_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0000286_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0001775_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002015_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0002923_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00015_0002868_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0001302_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0001766_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0000709_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0003905_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0001257_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0000362_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0000876_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0000806_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00016_0003103_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004205_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0003044_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0001004_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000405_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000118_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001384_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000260_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0004125_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0000774_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004098_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002494_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0001415_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0004478_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002246_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000563_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0001258_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0004193_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004886_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0004016_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001455_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002002_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0000634_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0001003_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000994_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004859_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0001010_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0003803_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000823_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001509_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003762_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003507_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002434_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00015_0001344_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0001647_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002131_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0003696_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0004499_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004247_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00036_0004246_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0001062_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001851_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003061_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003226_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004640_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002387_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0004205_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0003438_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000646_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0003064_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0004650_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00026_0000911_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0002617_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0000719_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004582_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002270_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004717_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0003135_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002189_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0002343_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0001141_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0001188_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0000856_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001760_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00024_0000625_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004656_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001369_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0001837_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001807_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0000338_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000568_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0003807_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00042_0001105_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0000731_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0000906_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000380_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004356_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001410_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004384_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004132_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002286_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00017_0000790_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00025_0002186_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0003188_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0000833_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0004641_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000236_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004681_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002450_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002141_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0001557_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0002459_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001430_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000873_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001035_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0000625_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0001404_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003253_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0000879_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004356_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0001207_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0000981_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0003759_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001419_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0003549_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0001146_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00017_0003248_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001538_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0001452_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0000202_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000252_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001668_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003456_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0001016_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003481_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004403_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0000736_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00020_0003446_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000232_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004007_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0003346_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00015_0000196_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0001706_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002483_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0003612_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0001954_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0001402_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00015_0000563_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0004039_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002244_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0000598_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004582_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0000663_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0003435_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000059_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004765_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00018_0004920_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002855_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0003374_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000102_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0001343_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0000981_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0001384_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000642_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001995_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0001864_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0002082_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002158_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000398_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0000304_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0002551_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0002192_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001241_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001734_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0002801_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00016_0004721_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000994_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000218_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0001676_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002015_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0003040_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00016_0003518_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0003257_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0004812_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003730_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000911_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0000242_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002678_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000260_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0001886_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00015_0003583_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001459_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0000646_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0001914_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0000221_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003059_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0001552_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004046_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000322_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002348_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0002375_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000840_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003467_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002457_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004685_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0003922_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0003226_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0004496_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001576_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0002089_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0000600_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0002377_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0002141_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004749_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000412_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00015_0000322_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0003515_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0000828_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0004918_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0003349_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00013_0003730_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0003645_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001708_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001837_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0000296_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0001978_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0004364_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0000491_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0000978_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0003630_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003841_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0004741_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0004851_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003557_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000662_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004685_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0000839_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0000355_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0001466_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000296_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00002_0004814_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0002759_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004784_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0001241_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002691_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0001953_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004578_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00014_0000431_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0004307_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0002048_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002986_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0004756_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00017_0000994_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0001551_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00011_0003730_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00012_0000966_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0002287_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003785_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0004256_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0000571_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0002609_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0000391_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003255_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002679_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00021_0001419_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0002488_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0003475_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0001072_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00006_0003463_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0000287_1.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0003588_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00001_0002813_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00008_0003390_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00009_0000985_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00003_0003582_0.pdb
======================================================
DONE ::     1 starting structures  24.1343 cpu seconds
This process generated      0 decoys from       0 attempts
======================================================
[REAL OPT]Default value for [-cpu_frac]   10
[REAL OPT]Default value for [-frame_rate]   10
[INT  OPT]Default value for [-cpu_run_time]  7200
command executed: /Users/rhiju/rosetta++/rosetta.mactelboincgraphics -extract -l temp.1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out.list -paths /Users/rhiju/paths.txt -s 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out -enable_dna -enable_rna -fa_input
[T/F  OPT]Default FALSE value for [-no_option_display]
[T/F  OPT]Default FALSE value for [-args_file]
[STR  OPT]New value for [-paths] /Users/rhiju/paths.txt.
[T/F  OPT]Default FALSE value for [-version]
[T/F  OPT]Default FALSE value for [-score]
[T/F  OPT]Default FALSE value for [-abinitio]
[T/F  OPT]Default FALSE value for [-refine]
[T/F  OPT]Default FALSE value for [-assemble]
[T/F  OPT]Default FALSE value for [-idealize]
[T/F  OPT]Default FALSE value for [-relax]
[T/F  OPT]Default FALSE value for [-abrelax]
[T/F  OPT]Default FALSE value for [-abrelax_mode]
[T/F  OPT]Default FALSE value for [-design]
[T/F  OPT]Default FALSE value for [-dock]
[T/F  OPT]Default FALSE value for [-membrane]
[T/F  OPT]Default FALSE value for [-loops]
[T/F  OPT]Default FALSE value for [-pdbstats]
[T/F  OPT]Default FALSE value for [-interface]
[T/F  OPT]Default FALSE value for [-barcode_stats]
[T/F  OPT]Default FALSE value for [-featurize]
[T/F  OPT]Default FALSE value for [-pKa]
[T/F  OPT]Default FALSE value for [-pose_looping]
[T/F  OPT]Default FALSE value for [-domain_insertion]
[T/F  OPT]Default FALSE value for [-antibody_modeler]
[T/F  OPT]Default FALSE value for [-pose1]
[T/F  OPT]Default FALSE value for [-bk_min]
[T/F  OPT]Default FALSE value for [-adna]
[T/F  OPT]Default FALSE value for [-pdna]
[T/F  OPT]Default FALSE value for [-prna]
[T/F  OPT]Default FALSE value for [-jumping]
[T/F  OPT]Default FALSE value for [-pose_abinitio]
[T/F  OPT]Default FALSE value for [-pose_rhiju]
[T/F  OPT]New TRUE value for [-extract]
[T/F  OPT]Default FALSE value for [-jump_relax]
[T/F  OPT]Default FALSE value for [-cst_mode]
[T/F  OPT]Default FALSE value for [-mj_min]
Rosetta mode: pose1
[T/F  OPT]Default FALSE value for [-chain]
[T/F  OPT]Default FALSE value for [-protein]
[T/F  OPT]Default FALSE value for [-series]
[INT  OPT]Default value for [-nstruct]  10
[T/F  OPT]Default FALSE value for [-read_all_chains]
[T/F  OPT]Default FALSE value for [-preserve_header]
[T/F  OPT]Default FALSE value for [-use_pdb_numbering]
[T/F  OPT]Default FALSE value for [-flip_symmetric_sidechains]
[T/F  OPT]New TRUE value for [-fa_input]
[T/F  OPT]Default FALSE value for [-repack]
[T/F  OPT]Default FALSE value for [-no_optH]
[T/F  OPT]Default FALSE value for [-overwrite]
[T/F  OPT]Default FALSE value for [-no_filters]
[T/F  OPT]Default FALSE value for [-output_pdb_gz]
[T/F  OPT]Default FALSE value for [-output_silent_gz]
[T/F  OPT]Default FALSE value for [-output_scorefile_gz]
[T/F  OPT]Default FALSE value for [-pose_silent_out]
[T/F  OPT]Default FALSE value for [-sasapack_bvalues]
[T/F  OPT]Default FALSE value for [-cenlist_values]
[T/F  OPT]Default FALSE value for [-termini]
[T/F  OPT]Default FALSE value for [-Nterminus]
[T/F  OPT]Default FALSE value for [-Cterminus]
[T/F  OPT]Default FALSE value for [-use_trie]
[T/F  OPT]Default FALSE value for [-no_trie]
[T/F  OPT]Default FALSE value for [-use_conformer]
[T/F  OPT]Default FALSE value for [-use_bbind_conformer]
[T/F  OPT]Default FALSE value for [-trials_trie]
[T/F  OPT]Default FALSE value for [-no_trials_trie]
[T/F  OPT]Default FALSE value for [-pose_relax]
[T/F  OPT]Default FALSE value for [-output_interaction_graph_memory_usage]
[T/F  OPT]Default FALSE value for [-read_interaction_graph]
[T/F  OPT]Default FALSE value for [-write_interaction_graph]
[STR  OPT]Default value for [-ig_file] .
[T/F  OPT]Default FALSE value for [-packer_precompute_only]
[T/F  OPT]Default FALSE value for [-tight_memory_restrictions]
[T/F  OPT]Default FALSE value for [-lazy_ig]
[T/F  OPT]Default FALSE value for [-linmem_ig]
[T/F  OPT]Default FALSE value for [-minimalist_ig]
[T/F  OPT]Default FALSE value for [-use_sasa_pack_score]
[T/F  OPT]Default FALSE value for [-output_dot_kinemage]
[T/F  OPT]Default FALSE value for [-pack_low_temp_annealing]
[T/F  OPT]Default FALSE value for [-multi_cool_annealer]
[T/F  OPT]Default FALSE value for [-debug_annealer_design]
[T/F  OPT]Default FALSE value for [-no_his_his_pairE]
[T/F  OPT]Default FALSE value for [-silent_input]
[T/F  OPT]Default FALSE value for [-skip_scorefile_check]
[T/F  OPT]Default FALSE value for [-timer]
[T/F  OPT]Default FALSE value for [-count_attempts]
[T/F  OPT]Default FALSE value for [-status]
[T/F  OPT]Default FALSE value for [-decoy_status]
[T/F  OPT]Default FALSE value for [-ise_movie]
[T/F  OPT]Default FALSE value for [-output_all]
[T/F  OPT]Default FALSE value for [-output_chi_silent]
[T/F  OPT]Default FALSE value for [-accept_all]
[T/F  OPT]Default FALSE value for [-skip_missing_residues]
[T/F  OPT]Default FALSE value for [-use_input_sc]
[T/F  OPT]Default FALSE value for [-use_input_cb]
[STR  OPT]Default value for [-weightfile] none.
[STR  OPT]Default value for [-cst] cst.
[STR  OPT]Default value for [-dpl] dpl.
[STR  OPT]Default value for [-resfile] none.
[STR  OPT]Default value for [-equiv_resfile] none.
[T/F  OPT]Default FALSE value for [-auto_resfile]
[T/F  OPT]Default FALSE value for [-chain_inc]
WARNING:: refold_input T, input_fa T
 refolding of fullatom input not suppported
 setting refold_input F
WARNING:: input_fa T, require_start F
fullatom input not allowed when no starting structures are being input 
setting input_fa F
[T/F  OPT]Default FALSE value for [-full_filename]
[T/F  OPT]Default FALSE value for [-map_sequence]
[INT  OPT]Default value for [-max_frags]  200
[T/F  OPT]Default FALSE value for [-output_centroids]
[STR  OPT]Default value for [-protein_name_prefix] .
[STR  OPT]Default value for [-frags_name_prefix] .
[T/F  OPT]Default FALSE value for [-protein_name_prefix_homolog]
[T/F  OPT]Default FALSE value for [-use_homolog_env_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_pair_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_cendist_stats]
[T/F  OPT]Default FALSE value for [-use_homolog_env_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-use_homolog_pair_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-use_homolog_cendist_stats_in_farlx]
[T/F  OPT]Default FALSE value for [-output_hbond_info]
[T/F  OPT]Default FALSE value for [-monomer_input]
[REAL OPT]Default value for [-vdw_reweight]   1
[REAL OPT]Default value for [-env_reweight]   1
[REAL OPT]Default value for [-pair_reweight]   1
[REAL OPT]Default value for [-cb_reweight]   1
[REAL OPT]Default value for [-sheet_reweight]   1
[REAL OPT]Default value for [-ss_reweight]   1
[REAL OPT]Default value for [-hs_reweight]   1
[REAL OPT]Default value for [-rsigma_reweight]   1
[REAL OPT]Default value for [-rg_reweight]   1
[REAL OPT]Default value for [-pc_reweight]   1
[REAL OPT]Default value for [-fa_atr_reweight]   1
[REAL OPT]Default value for [-fa_rep_reweight]   1
[REAL OPT]Default value for [-fa_dun_reweight ]   1
[REAL OPT]Default value for [-fa_pair_reweight]   1
[REAL OPT]Default value for [-fa_plane_reweight]   1
[REAL OPT]Default value for [-fa_solv_reweight]   1
[REAL OPT]Default value for [-fa_ref_reweight ]   1
[REAL OPT]Default value for [-fa_pH_reweight]   1
[REAL OPT]Default value for [-fa_h2o_reweight]   1
[REAL OPT]Default value for [-fa_prob1b_reweight]   1
[REAL OPT]Default value for [-fa_gb_elec_reweigh]   1
[REAL OPT]Default value for [-hb_srbb_reweight]   1
[REAL OPT]Default value for [-hb_lrbb_reweight]   1
[REAL OPT]Default value for [-hb_sc_reweight]   1
[REAL OPT]Default value for [-chainbreak_reweight]   1
[REAL OPT]Default value for [-electron_density_reweight]   1
[REAL OPT]Default value for [-dummy_model_reweight]   1
[REAL OPT]Default value for [-saxs_model_reweight]   1
[REAL OPT]Default value for [-Wplane_total]   0
[REAL OPT]Default value for [-barcode_reweight]   1
[REAL OPT]Default value for [-barcode_energy_reweight]   1
[T/F  OPT]Default FALSE value for [-fa_max_dis]
[T/F  OPT]Default FALSE value for [-hydrogen_interaction_cutoff]
[T/F  OPT]Default FALSE value for [-find_disulf]
[T/F  OPT]Default FALSE value for [-fix_disulf]
[T/F  OPT]Default FALSE value for [-prna]
[T/F  OPT]New TRUE value for [-enable_dna]
[T/F  OPT]New TRUE value for [-enable_rna]
[T/F  OPT]Default FALSE value for [-dna_interface]
[T/F  OPT]Default FALSE value for [-enable_ligand_aa]
[T/F  OPT]Default FALSE value for [-phospho_ser]
[T/F  OPT]Default FALSE value for [-surface]
[T/F  OPT]Default FALSE value for [-loops]
[T/F  OPT]Default FALSE value for [-taboo]
[T/F  OPT]Default FALSE value for [-vary_omega]
[T/F  OPT]Default FALSE value for [-fine_hb_categories]
[T/F  OPT]Default FALSE value for [-geometric_sol]
[T/F  OPT]Default FALSE value for [-multi_chain]
[T/F  OPT]Default FALSE value for [-ex1]
[T/F  OPT]Default FALSE value for [-ex2]
[T/F  OPT]Default FALSE value for [-ex3]
[T/F  OPT]Default FALSE value for [-ex4]
[T/F  OPT]Default FALSE value for [-ex1aro]
[T/F  OPT]Default FALSE value for [-ex1aro_half]
[T/F  OPT]Default FALSE value for [-ex2aro_only]
[T/F  OPT]Default FALSE value for [-ex1aro_exposed]
[T/F  OPT]Default FALSE value for [-ex2aro_exposed]
[T/F  OPT]Default FALSE value for [-exOH]
[INT  OPT]Default value for [-extrachi_cutoff]  18
[T/F  OPT]Default FALSE value for [-rot_pert]
[T/F  OPT]Default FALSE value for [-rot_pert_input]
[T/F  OPT]Default FALSE value for [-exdb]
[T/F  OPT]Default FALSE value for [-use_electrostatic_repulsion]
[T/F  OPT]Default FALSE value for [-explicit_h2o]
[T/F  OPT]Default FALSE value for [-solvate]
[T/F  OPT]Default FALSE value for [-pH]
[T/F  OPT]Default FALSE value for [-try_both_his_tautomers]
[T/F  OPT]Default FALSE value for [-hydrate_dna]
[T/F  OPT]Default FALSE value for [-ex_dna_waters]
[T/F  OPT]Default FALSE value for [-minimize_rot]
[T/F  OPT]Default FALSE value for [-read_hetero_h2o]
[T/F  OPT]Default FALSE value for [-Wint_score_only]
[T/F  OPT]Default FALSE value for [-Wint_repack_only]
[T/F  OPT]Default FALSE value for [-ligand]
[T/F  OPT]Default FALSE value for [-enzyme_design]
[T/F  OPT]Default FALSE value for [-score_contact_flag]
[T/F  OPT]Default FALSE value for [-score_contact_weight]
[T/F  OPT]Default FALSE value for [-score_contact_threshold]
[T/F  OPT]Default FALSE value for [-scorefxn]
default centroid scorefxn:  4
default fullatom scorefxn:  12
[INT  OPT]Default value for [-run_level]  0
[T/F  OPT]Default FALSE value for [-silent]
[T/F  OPT]Default FALSE value for [-output_silent_gz]
[T/F  OPT]Default FALSE value for [-verbose]
[T/F  OPT]Default FALSE value for [-gush]
[T/F  OPT]Default FALSE value for [-yap]
[T/F  OPT]Default FALSE value for [-chat]
[T/F  OPT]Default FALSE value for [-inform]
[T/F  OPT]Default FALSE value for [-quiet]
run level:  0
[T/F  OPT]Default FALSE value for [-benchmark]
[T/F  OPT]Default FALSE value for [-debug]
[INT  OPT]Default value for [-sym_des_units]  1
[T/F  OPT]Default FALSE value for [-mj_min]
[REAL OPT]Default value for [-mod_hhrep_height]   1
[REAL OPT]Default value for [-mod_hhrep_width]   1
[REAL OPT]Default value for [-mod_hhrep_center]   2.79999995
[REAL OPT]Default value for [-mod_hhrep_exponent]   4
[REAL OPT]Default value for [-smooth_etable_ljweight]   1.15999997
[REAL OPT]Default value for [-smooth_etable_solvweight]   1.5
[STR  OPT]New value for [-s] 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out.
Starting structure: 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out
Reading /users/rhiju/rosetta_database/Rama_smooth_dyn.dat_ss_6.4
[STR  OPT]Default value for [-description_file] rosetta_description.txt.
Reading /users/rhiju/rosetta_database/phi.theta.36.HS.resmooth
Reading /users/rhiju/rosetta_database/phi.theta.36.SS.resmooth
[STR  OPT]Default value for [-atom_vdw_set] default.
[T/F  OPT]Default FALSE value for [-IUPAC]
Atom_mode set to all
Reading /users/rhiju/rosetta_database/paircutoffs
[T/F  OPT]Default FALSE value for [-interface_ds]
[T/F  OPT]Default FALSE value for [-decoystats]
set_decoystats_flag: from,to F F
[T/F  OPT]Default FALSE value for [-decoyfeatures]
[T/F  OPT]Default FALSE value for [-t32s3]
[T/F  OPT]Default FALSE value for [-evolution]
[T/F  OPT]Default FALSE value for [-evol_recomb]
[T/F  OPT]Default FALSE value for [-profile]
BOINC :: [2007- 7- 2 12:14: 8:] :: mode: pose1 :: nstartnum: 1 :: number_of_output: 10 :: num_decoys: 0 :: pct_complete: 0
[T/F  OPT]Default FALSE value for [-watchdog]
[T/F  OPT]Default FALSE value for [-pose_benchmark]
[T/F  OPT]Default FALSE value for [-pose_barcode_stats]
[T/F  OPT]Default FALSE value for [-bk_min]
[T/F  OPT]Default FALSE value for [-jumping]
[T/F  OPT]Default FALSE value for [-pose_abinitio]
[T/F  OPT]Default FALSE value for [-electron_density_score]
[T/F  OPT]New TRUE value for [-extract]
[T/F  OPT]New TRUE value for [-fa_input]
[T/F  OPT]New TRUE value for [-s]
[STR  OPT]New value for [-s] 1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out.
[STR  OPT]Default value for [-start_pdb] dummy.
[T/F  OPT]Default FALSE value for [-t]
[T/F  OPT]Default FALSE value for [-all]
[T/F  OPT]New TRUE value for [-l]
[T/F  OPT]New TRUE value for [-l]
[STR  OPT]New value for [-l] temp.1a4d__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1a4d_-_1809_0.rms.clean.out.list.
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
initializing full atom functions
[T/F  OPT]Default FALSE value for [-soft_rep]
[T/F  OPT]Default FALSE value for [-soft_rep_design]
[T/F  OPT]Default FALSE value for [-use_aw]
[T/F  OPT]Default FALSE value for [-use_bw]
[T/F  OPT]Default FALSE value for [-use_packing_etables_always]
[T/F  OPT]Default FALSE value for [-smooth_etable]
[T/F  OPT]Default FALSE value for [-reduce_templates]
[T/F  OPT]Default FALSE value for [-gen_born]
[T/F  OPT]Default FALSE value for [-small_radii]
[STR  OPT]Default value for [-fa_lj_rep_slope] highres.
[T/F  OPT]Default FALSE value for [-dna_weights]
Starting energy table calculation
Energy table parameter set: polh_aroh  Revision: 14003 Date: 2007-04-06 11:24:40 -0700 (Fri, 06 Apr 2007)
[T/F  OPT]Default FALSE value for [-mod_hhrep]
Finished calculating energy tables.
[T/F  OPT]Default FALSE value for [-mod_etable]
[T/F  OPT]Default FALSE value for [-input_etables]
[T/F  OPT]Default FALSE value for [-output_etables]
WARNING! WARNING! Skipping bbdep, avgE, table readin.
[T/F  OPT]Default FALSE value for [-new_centroid_packing]
[REAL OPT]Default value for [-centroid_pack_weight]   2
[T/F  OPT]Default FALSE value for [-separate_centroid_pack_score]
[REAL OPT]Default value for [-cb_weight]   1
[REAL OPT]Default value for [-localstrandpair_penalty]   0
[REAL OPT]Default value for [-rsd_wt_helix]   1
[REAL OPT]Default value for [-rsd_wt_loop]   1
[REAL OPT]Default value for [-rsd_wt_strand]   1
[REAL OPT]Default value for [-strand_dist_cutoff]   6.5
[T/F  OPT]Default FALSE value for [-stretch_strand_dist_cutoff]
[REAL OPT]Default value for [-seq_sep_scale]   20
[REAL OPT]Default value for [-max_strand_dist_cutoff]   12
[T/F  OPT]Default FALSE value for [-ignore_sspair_barcode_in_score]
[T/F  OPT]Default FALSE value for [-handedness_score]
Pose::dump_pdb: .//S_00007_0001762_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00007_0004579_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00004_0003597_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00005_0004812_0.pdb
All RNA atoms detected, using Atom_tree object
Non protein atoms detected, using Atom_tree object
Pose::dump_pdb: .//S_00010_0000290_0.pdb
======================================================
DONE ::     1 starting structures  2.21884 cpu seconds
This process generated      0 decoys from       0 attempts
======================================================
