INFORMATION on Rosetta decoys

Rhiju Das
rhiju@u.washington.edu
April 26, 2007


This archive contains "decoys" (i.e., ab initio models) generated by Fragment Assembly of RNA, as implemented in the Rosetta software. 

Each subdirectory contains the assumed native PDB; 5 of the lowest RMS decoys; and 500 of the lowest energy decoys from a large run (~50,000 decoys). We are interested in finding more sophisticated energy functions and refinement procedures to discriminate the native PDB and lowest RMS decoys from the non-native decoys from each of tese runs.

Please feel free to contact me if you would like more conformations to test!

The reference for these data is:

"Automated de novo prediction of native-like RNA tertiary structures", Rhiju Das and David Baker, submitted Proc. Natl. Acad. Sci. USA.

